The interference with app launching and the other things was without alerts. It was silent. But exiting RO resolved the issues.What do the alerts say about the blocking of dropbox or chrome? There are a few different reasons why RO will block an app and the alert will list the reason.
Installations are tricky to deal with but we'll see if there's something we can improve. Do you have a particular installation that you had trouble with?
And what kind of interference with shutdown?